Journal Publications | Book Chapters | Conference Presentations | Invited Talks

(Number of citations as reported in http://www.scopus.com as of November 2022; Impact Factor as of 2022; * - equal contributions)
  1. Sherekar S, Todankar CS, Viswanathan GA. Modulating the dynamics of NFkB and PI3K enhances the ensemble-level TNFR1 signaling mediated apoptotic response. npj Systems Biology and Applications 2023;9:57 (Impact factor: 4.67) article pdf.
  2. Biswas S, Tikader B, Kar S, Viswanathan GA. Modulation of signaling cross-talk between pJNK and pAKT generates optimal apoptotic response. PLoS Comp Biol 2022;18:e1010626 (Impact factor: 4.53) article pdf.
  3. Japhalekar K, Srinivasan S, Viswanathan GA*, Venkatesh KV*. Flux balance analysis for overproduction of organic acids by Synechocystis sp. PCC 6803 under dark anoxic conditioni. Biochem Engg J 2022;178:108297. (Impact factor: 4.446; Cited: 1 time) article pdf
  4. Sherekar S, Viswanathan GA. Boolean dynamic modelling of cancer signaling networks: Prognosis, progression and therapeutics. Comp and Systems Oncol. 2021;1:e1017 (Impact factor: 1) pdf
  5. Parundekar A, Viswanathan GA. Retroactivity induced operating regime transition in an enzymatic futile cycle. PloS One. 2021;16:e0250830 (Impact factor: 3.752) pdf
  6. Parundekar A*, Kalantre G*, Khadpekar A, Viswanathan GA. Operating regimes in a single enzymatic cascade at ensemble-level. PLoS One 2019;8:e0220243 (Impact factor: 3.752) pdf
  7. Narendiran K, Viswanathan GA. Wall temperature modulates transversal spatiotemporal pattern selection in shallow, non-adiabatic packed-bed reactors. Ind. & Eng. Chem. Res. 2019;58:11787-11798 (Impact factor: 4.326; Cited: 1 time) pdf
  8. Manohar S*, Shah P*, Biswas S*, Mukadam A, Joshi M, Viswanathan GA. Combining fluorescent cell barcoding and flow cytometry-based phospho-ERK1/2 detection at short time-scales in adherent cells. Cytometry A 2019;95A:192-200 (Impact factor: 4.355; Cited: 6 times) pdf [Editor's pick as a featured article]
  9. Kalantre G, Viswanathan GA. Reconstruction of ensemble of single cell time trajectories from discrete-time fluorescence data: Oscillatory MAPK dynamics. IFAC FOSBE 2016;49:184-189 (Impact factor: 1; Cited: 1 time) pdf
  10. Narendiran K, Viswanathan GA. Impact of wall heat transport on transversal pattern formation in shallow, non-adiabatic packed-bed reactors. Ind. & Eng. Chem. Res. 2015;54:7352-7363. (Impact factor: 4.326; Cited: 4 times) pdf
  11. Krishnakumar S, Gaudana SB, Vinh NX, Viswanathan GA, Chetty M, Wangikar PP. Coupling of cellular processes and their coordinated oscillations under continuous light in Cyanothece sp. ATCC 51142, a diazotrophic unicellular cyanobacterium. PLoS One 2015;10:e0125148. (Impact factor: 3.752; Cited: 6 times) pdf
  12. Krishnakumar S, Gaudana SB, Digmurti MG, Viswanathan GA, Chetty M, Wangikar PP. Influence of mixotrophic growth on rhythmic oscillations in expression of metabolic pathways in diazotrophic cyanobacterium Cyanothece sp. ATCC 51142. Bioresource Technology 2015;188:145. (Impact factor: 11.88; Cited: 4 times) pdf
  13. Gaudana S*, Krishnakumar S*, Alagesan S, Digmurti M, Viswanathan GA, Chetty M, Wangikar PP. Rhythmic and sustained oscillations in metabolism and gene expression of Cyanothece sp. ATCC 51142 under constant light. Frontiers in Microbiology 2013;4:474. (Impact factor: 8.2; Cited: 12 times) pdf
  14. Baraskar AA*, Deb A*, Viswanathan GA. Noise propagation in series enzymatic cascades. Proceedings of the 12th IFAC Symposium on Computer Applications in Biotechnology, 2013;12-Part 1:89-94. (Impact factor: 1; Cited: 3 times) pdf
  15. Krishnakumar S*, Durai DA*, Wangikar PP, Viswanathan GA. SHARP: Genome-scale identification of gene-protein-reaction associations in cyanobacteria. Photosynthesis Research. 2013;118:181-190 (Impact factor: 3.387; Cited 5 times) pdf
  16. Kolios G, Luss D, Garg R, Viswanathan GA. Efficient computation of periodic state of cyclic fixed-bed processes. Chem. Engng Sci. 2013;101:90-98. (Impact factor: 4.89; Cited: 4 times) pdf
  17. Krishnakumar S, Gaudana S, Viswanathan GA, Pakrasi H, Wangikar PP. Rhythm of carbon and nitrogen fixation in unicellular cyanobacteria under turbulent and highly aerobic conditions. Biotech. & Bioengg. 2013;110:2371-2379. (Impact factor: 4.53; Cited 21 times) pdf
  18. Dhananjaneyulu V*, Vidya Ananda Sagar P*, Gopalakrishnan K*, Viswanathan GA. Noise propagation in two-step series MAPK cascade. PLoS One 2012;7:e35958. (Impact factor: 3.752; Cited: 10 times) pdf
  19. Kulkarni VV, Venkatesh KV, Viswanathan GA, Riedel M. Characterizing the Memory of the GAL Regulatory Network in Saccharomyces cerevisiae. Systems and Synthetic Biology 2011;5:97-104. (Impact factor: 1Cited: 1 time)pdf
  20. Kulkarni VV, Kareenhalli VV, Malakar P, Pao LY, Safonov MG, Viswanathan GA. Stability analysis of the GAL regulatory network in Saccharomyces cerevisiae and Kluyveromyces lactis. BMC Bioinformatics 2010;11(Suppl 1):S43. (Impact factor: 3.169; Cited 14 times) pdf
  21. Viswanathan GA, Jayaprakash C, Sealfon SC, Hayot F. Shared kinase fluctuations between two enzymatic reactions. Phys. Biol. 2008;5:046002. (Impact factor: 2.583; Cited 4 times) pdf
  22. Viswanathan GA, Sheintuch M, Luss D. Transversal hot zones formation in catalytic packed-bed reactors. Ind. & Eng. Chem. Res. 2008;47:7509-7523 (100th Anniversary issue). (Impact factor: 4.326; Cited 25 times) pdf
  23. Viswanathan GA, Seto J, Patil S, Nudelman G, Sealfon SC. Getting started in biological pathway construction and analysis. PLoS Computational Biology 2008;4(2):e16. (Impact factor: 4.53; Cited 71 times) pdf
  24. Viswanathan GA*, Nudelman G*, Patil S, Sealfon SC. BioPP: A tool for web-publication of biological pathways. BMC Bioinformatics 2007;8:168.  (Impact factor: 3.169; Cited 14 times) pdf
  25. Sundarram S, Viswanathan GA, Luss D. Reactor diameter impact on hot zone dynamics in an adiabatic packed bed reactor. AIChE J. 2007;53:1578-1590. (Impact factor: 4.167; Cited 5 times) pdf
  26. Viswanathan GA, Luss D. Hot zones formation and dynamics in long adiabatic packed-bed reactors. Ind. & Eng. Chem. Res., 2006;45:7057-7066. (Impact factor: 4.326; Cited 12 times) pdf
  27. Viswanathan GA, Luss D. Model prediction of hot spots formation in shallow, adiabatic packed-bed reactors. AIChE J., 2006;52:1533-1538. (Impact factor: 4.167; Cited 19 times) pdf
  28. Viswanathan GA, Luss D. Moving transversal hot zones in adiabatic, shallow packed bed reactors. AIChE J., 2006;52:705-717. (Impact factor: 4.167; Cited 19 times) pdf erratum
  29. Viswanathan GA, Bindal A, Khinast J, Luss D. Stationary transversal hot zones in adiabatic packed bed reactors. AIChE J., 2005;51:3028-3038. (Impact factor: 4.167; Cited 22 times) pdf
  30. Viswanathan GA, Ramana Rao BVR, Vijayavalli R. Solid Waste Management - A review. Proceedings of National Seminar on New Trends in Electrochemical Sci. and Tech., Karaikudi, 1995. (Impact factor: 0.5)
Journal Publications | Book Chapters | Conference Presentations | Invited Talks
  1. Viswanathan GA, Narendiran K. Mathematical modeling and analyses of biological networks. In Systems and Synthetic Biology, Vol. 4. Ed. V. Singh, "Recent Developments in Biotechnology", Series Ed. J.N. Govil, Studium Press, 2014.
Journal Publications | Book Chapters | Conference Presentations | Invited Talks
  1. Diagnostic intracellular biomarker detection in adherent cancer cells using highthroughput phospho-flow. Global Academic Program. (with Dr. Sonal Manohar) Stockholm, Sweden. (May 2018)
  2. Topological and Functional analysis of comprehensive TNFa signaling network. 16th TNF Superfamily Meeting, Singapore (Apr 2017). (Best poster award)
  3. Topological and Functional analysis of TNFa signaling network reveals spcific interactions as potential targets. 36th Annual Conference of Indian Association for Cancer Research (with Sonal Manohar) Amala Cancer Research Center, Thrissur, Kerala, India (Feb 2017). (Best presenation award for Dr. Sonal Manohar)
  4. Reconstruction of ensemble of single cell time trajectories from discrete-time fluorescence data: Oscillatory MAPK dynamics. FOSBE, IFAC Magdeburg, Germany (Oct 2016).
  5. Topological analyses of Tumor Necrosis Factor alpha network (poster). 15th International TNF conference, Ghent, Belgium (May 2015).
  6. Noise propagation in enzymatic cascades (poster). Gordon conference on "Stochastic physics in biology", Ventura, USA (January 2015).
  7. Systems biology of TNFa signaling, BioWorld 2013, Indian Institute of Technology Delhi (December 2013).
  8. Spatiotemporal Pattern Formation in Non-Adiabatic, Catalytic Packed Bed Reactors (poster). Chemcon, Mumbai (December 2013).
  9. Transversal pattern formation in non-adiabatic catalytic packed-bed reactors. MaCKiE 2013: International Workshop on Mathematics in Chemical Kinetics and Engineering, IIT Madras, Chennai, India. (February 2013)
  10. Noise propagation in series MAPK cascades (poster). Gordon conference on "Stochastic physics in biology", Ventura, USA (January 2013).
  11. Intrinsic noise propagation in two-step enzymatic cascades (poster) 56th Biophysical Society Annual Meeting, San Diego, USA. (February 2012) (withdrawn, due to delay in visa processing)
  12. Tuning noise propagation in a two-step series enzymatic cascade (poster), European Conference in Computational Biology, Ghent, Belgium (September 2010).
  13. Tuning noise propagation in a series enzymatic cascade, Emerging areas in biosciences and bioengineering, Mumbai. (February 2009).
  14. Type I Interferon Signaling in Dendritic Cells, ASCB Annual Meeting 2007, Washington DC (December 2007).
  15. Transversal Hot Zone Formation in Adiabatic Packed Bed Reactors, AIChE Annual Meeting 2005, Cincinnati (November 2005).
  16. Transverse Non-Uniform States in Packed Bed Reactors (Poster), Engineering of Chemical Complexity, Berlin (May 2004).
  17. Transverse Non-Uniform States in Packed Bed Reactors (Poster), Sigma Xi Annual Research Day Symposium, Houston (April 2004).
  18. Corrosion Studies on various Ni-Cr Plating Systems, IMF Conference, Mumbai (February 1999).
  19. Studies on the Electrochemical Treatment of Plating Sludge, National Seminar on Electrochemistry in Electronics, IISc, Bangalore (February 1996).
  20. Investigation of the behaviour of Cr(III) in presence of Ni(II) in Sulphuric Acid medium, Sixth National Convention of Electrochemists, Karaikudi, India (December 1995).
  21. Electrochemical Reactors – An Overview, InChES `94, Annamalai University, India (February 1994).
Journal Publications | Book Chapters | Conference Presentations | Invited Talks
  1. Topological and functional analysis of comprehensive TNFa signaling network. Accelerating Biology 2018: Digitizing Life, CDAC, Pune (January 2018).
  2. Topological and functional analysis of comprehensive TNFa signaling network. Big Data Analysis, Bose Institute, Kolkata (September 2017).
  3. Pattern formation in packed-bed reactors. 3rd Indo-German workshop on Advances in materials, reaction and separation proceses, IIT Guwahati, Guwahati (February 2016).
  4. Systems Biology of Tumor necrosis factor alpha signaling, Department of Biotechnology, SVCE, Sriperambudur, Chennai, India (December 2015).
  5. Systems Biology of Tumor necrosis factor alpha signaling, NMIMS School of Science, Mumbai, India (April 2015).
  6. Noise propagation in enzymatic cascades, NNMCB Symposium, IIT Gandhinagar, Gandhinagar, India (March 2015).
  7. Library: A center stage? Workshop on Meeting User Expectations, IIT Bombay, Powai, Mumbai, India (May 2013).
  8. SHARP: A novel PSI-BLAST based approach for annotation of metabolic network of prokaryotes. Indo - US workshop on "Cyanobacteria: Molecular Networks to Biofuels" Lonavala, India (December 2012).
  9. Noise propagation in MAPK Cascades. Indian Institute of Technology Gandhinagar, Gandhinagar (October 2012).
  10. Transversal hot zone formation and dynamics in packed-bed reactors. 2nd Indo-German workshop on Advances in reaction and separation processes, Bad Herrenalb, Germany (February 2012).
  11. Pattern formation in packed-bed reactors. National Institute of Technology Trichy, Tiruchirapalli. (February 2012).
  12. Transversal hot zone formation in catalytic packed-bed reactors. Recent trends in Experimental & Computational techniques in Chemical Engineering, National Institute of Technology Calicut, Kozhikode (August 2010).
  13. What Causes Transversal Hot Zones in Adiabatic Packed Bed Reactors. Indian Institute of Technology, Mumbai, India (July 2006).
  14. Formation of Transverse Non-Uniform States in Packed Bed Reactors. University of Stuttgart, Stuttgart (May 2004).